About OpenKnowledge@NAU | For NAU Authors

Items where Subject is "Q Science > QH Natural history > QH426 Genetics"

Up a level
Export as [feed] RSS
Group by: Creators | Item Type
Jump to: B | C | E | F | G | H | J | K | L | M | O | P | R | S | T | V | W | Y
Number of items at this level: 73.

B

Birdsell, Dawn N. and Antwerpen, Markus and Keim, Paul and Hanczaruk, Matthias and Foster, Jeffrey T. and Sahl, Jason W. and Wagner, David M. and Grass, Gregor (2013) Draft genome sequences of two Bulgarian Bacillus anthracis strains. Genome Announcements, 1 (2). e00152-13. ISSN 2169-8287

Birdsell, Dawn N. and Pearson, Talima and Price, Erin P. and Hornstra, Heidie M. and Nera, Roxanne D. and Stone, Nathan and Gruendike, Jeffrey and Kaufman, Emily L. and Pettus, Amanda H. and Hurbon, Audriana N. and Buchhagen, Jordan L. and Harms, N. Jane and Chanturia, Gvantsa and Gyuranecz, Miklos and Wagner, David M. and Keim, Paul S (2012) Melt analysis of mismatch amplification mutation assays (melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. PLoS ONE, 7 (3). e32866. ISSN 1932-6203

Bresler, V. and Montgomery, W. L. and Fishelson, L. and Pollak, P. E. (1998) Gigantism in a bacterium, Epulopiscium fishelsoni, correlates with complex patterns in arrangement, quantity, and segregation of DNA. Journal of Bacteriology, 180 (21). pp. 5601-5611. ISSN 1098-5530

Busch, Joseph D. and Miller, Mark P. and Paxton, Eben H. and Sogge, Mark K. and Keim, Paul (2000) Genetic variation in the endangered Southwestern Willow Flycatcher. Auk, 117 (3). pp. 586-595. ISSN 1938-4254

Busch, Joseph D. and Stone, Nathan E. and Nottingham, Roxanne and Araya-Anchetta, Ana and Lewis, Jillian and Hochhalter, Christian and Giles, John R. and Gruendike, Jeffrey and Freeman, Jeanne and Buckmeier, Greta and Bodine, Deanna and Duhaime, Roberta and Miller, Robert J. and Davey, Ronald B. and Olafson, Pia U. and Scoles, Glen A. and Wagner, David M. (2014) Widespread movement of invasive cattle fever ticks (Rhipicephalus microplus) in southern Texas leads to shared local infestations on cattle and deer. Parasites & Vectors, 7 (188). ISSN 1756-3305

C

Challacombe, Jean F and Altherr, Michael R and Xie, Gary and Bhotika, Smriti S and Brown, Nancy and Bruce, David and Campbell, Connie S and Campbell, Mary L and Chen, Jin and Chertkov, Olga and Cleland, Cathy and Dimitrijevic, Mira and Doggett, Norman A and Fawcett, John J and Glavina, Tijana and Goodwin, Lynne A and Green, Lance D and Han, Cliff S and Hill, Karen K and Hitchcock, Penny and Jackson, Paul J and Keim, Paul and Kewalramani, Avinash Ramesh and Longmire, Jon and Lucas, Susan and Malfatti, Stephanie and Martinez, Diego and McMurry, Kim and Meincke, Linda J and Misra, Monica and Moseman, Bernice L and Mundt, Mark and Munk, AChristine and Okinaka, Richard T and Parson-Quintana, B and Reilly, Lee Philip and Richardson, Paul and Robinson, Donna L and Saunders, Elizabeth and Tapia, Roxanne and Tesmer, Judith G and Thayer, Nina and Thompson, Linda S and Tice, Hope and Ticknor, Lawrence O and Wills, Patti L and Gilna, Paul and Brettin, Thomas S (2007) The complete genome sequence of Bacillus thuringiensis Al Hakam. Journal of Bacteriology, 189 (9). pp. 3680-3681. ISSN 1098-5530

Cope, Emily K. and Goldstein-Daruech, Natalia and Kofonow, Jennifer M. and Christensen, Lanette and McDermott, Bridget and Monroy, Fernando and Palmer, James N. and Chiu, Alexander G. and Shirtliff, Mark E. and Cohen, Noam A. and Leid, Jeff G. (2011) Regulation of virulence gene expression resulting from Streptococcus pneumoniae and nontypeable Haemophilus influenzae interactions in chronic disease. PLoS ONE, 6 (12). e28523. ISSN 1932-6203

Cummings, Craig A. and Chung, Christina A. Bormann and Fang, Rixun and Barker, Melissa and Brzoska, Pius and Williamson, Phillip C. and Beaudry, Jodi and Matthews, Molly and Schupp, James and Wagner, David M. and Birdsell, Dawn and Vogler, Amy J. and Furtado, Manohar R. and Keim, Paul and Budowle, Bruce (2010) Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investigative Genetics, 1 (1). 1/14/2015. ISSN 2041-2223

Curtsinger, Jw and Service, Pm and Prout, T (1994) Antagonistic Pleiotropy, Reversal of Dominance, and Genetic-Polymorphism. American Naturalist, 144 (2). pp. 210-228. ISSN 1537-5323

E

Engelthaler, David M. and Kelley, Erin and Driebe, Elizabeth M. and Bowers, Jolene and Eberhard, Carl F. and Trujillo, Jesse and Decruyenaere, Frederic and Schupp, James M. and Mossong, Joel and Keim, Paul and Even, Jos (2013) Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries. BMC Infectious Diseases, 13 (1). p. 339. ISSN 1471-2334

Eppinger, Mark and Pearson, Talima and Koenig, Sara S K and Pearson, Ofori and Hicks, Nathan and Agrawal, Sonia and Sanjar, Fatemeh and Galens, Kevin and Daugherty, Sean and Crabtree, Jonathan and Hendriksen, Rene S and Price, Lance B and Upadhyay, Bishnu P and Shakya, Geeta and Fraser, Claire M and Ravel, Jacques and Keim, Paul S (2014) Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. mBio, 5 (6). e01721-14. ISSN 2150-7511

F

Fettes, K. J. and Howard, N. and Hickman, D. T. and Adah, S. A. and Player, M. R. and Torrence, Paul F. and Micklefield, J. (2000) Replacement of the phosphodiester linkage in DNA with sulfamide and 3 '-N-sulfamate groups. Chemical Communications (9). pp. 765-766. ISSN 1364-548X

Foster, Jeffrey T. and Allan, Gerard J. and Chan, Agnes P. and Rabinowicz, Pablo D. and Ravel, Jacques and Jackson, Paul J. and Keim, Paul (2010) Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis). BMC Plant Biology, 10 (13). ISSN 1471-2229

Fouet, Agnès and Smith, Kimothy L. and Keys, Chris and Vaissaire, Josée and Le Doujet, Claudine and Levy, Martine and Mock, Michèle and Keim, Paul (2002) Diversity among French Bacillus anthracis isolates. Journal of Clinical Microbiology, 40 (12). pp. 4732-4734. ISSN 1098-660X

Fox, David T. and Schmidt, Emily N. and Tian, Hongzhao and Dhungana, Suraj and Valentine, Michael C. and Warrington, Nicole V. and Phillips, Paul D. and Finney, Kellan B. and Cope, Emily K. and Leid, Jeff G. and Testa, Charles A. and Koppisch, Andrew T. (2014) Sub-inhibitory fosmidomycin exposures elicits oxidative stress in Salmonella enterica Serovar typhimurium LT2. Plos One, 9 (4). e95271. ISSN 1932-6203

G

Giles, John R. and Peterson, A. Townsend and Busch, Joseph D. and Olafson, Pia U. and Scoles, Glen A. and Davey, Ronald B. and Pound, J. Mathews and Kammlah, Diane M. and Lohmeyer, Kimberly H. and Wagner, David M. (2014) Invasive potential of cattle fever ticks in the southern United States. Parasites & vectors, 7 (189). ISSN 1756-3305

Greenberg, David L. and Busch, Joseph D. and Keim, Paul and Wagner, David M. (2010) Identifying experimental surrogates for Bacillus anthracis spores: a review. Investigative Genetics, 1 (1). p. 4. ISSN 2041-2223

H

Hagell, Suzanne and Whipple, Amy V. and Chambers, Carol L. (2013) Population genetic patterns among social groups of the endangered Central American spider monkey (Ateles geoffroyi) in a human-dominated landscape. Ecology and Evolution, 3 (5). pp. 1388-1399. ISSN 2045-7758

Han, Cliff S. and Xie, Gary and Challacombe, Jean F. and Altherr, Michael R. and Bhotika, Smriti S. and Bruce, David and Campbell, Connie S. and Campbell, Mary L. and Chen, Jin and Chertkov, Olga and Cleland, Cathy and Dimitrijevic, Mira and Doggett, Norman A. and Fawcett, John J. and Glavina, Tijana and Goodwin, Lynne A. and Hill, Karen K. and Hitchcock, Penny and Jackson, Paul J. and Keim, Paul (2006) Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. Journal of Bacteriology, 188 (9). pp. 3382-3390. ISSN 1098-5530

Hansen, Cristina M. and Vogler, Amy J. and Keim, Paul and Wagner, David M. and Hueffer, Karsten (2011) Tularemia in Alaska, 1938-2010. Acta Veterinaria Scandinavica, 53 (61). ISSN 1751-0147

Heitkamp, Rae and Sahl, Jason and Summers, Amy and Roth, Amanda L and Kirkcup, Benjaman C (2014) Resolving antagonistic interactions among clinical isolates of Acinetobacter baumannii with phylogenetic analysis. In: American Society for Microbiology General Meeting, May 17-20th, 2014, Boston, Massachusetts.

Hendriksen, Rene S. and Price, Lance B. and Schupp, James M. and Gillece, John D. and Kaas, Rolf S. and Engelthaler, David M. and Bortolaia, Valeria and Pearson, Talima Ross and Waters, Andrew E. and Upadhyay, Bishnu Prasad and Shrestha, Sirjana Devi and Adhikari, Shailaja and Shakya, Geeta and Keim, Paul S. and Aarestrup, Frank M. (2011) Population genetics of Vibrio cholerae from Nepal in 2010: Evidence on the origin of the Haitian outbreak. mBio, 2 (4). e00157-11. ISSN 2150-7511

Hill, Karen K. and Ticknor, Lawrence O. and Okinaka, Richard T. and Asay, Michelle and Blair, Heather and Bliss, Katherine A. and Laker, Mariam and Pardington, Paige E. and Richardson, Amber P. and Tonks, Melinda and Beecher, Douglas J. and Kemp, John D. and Kolstø, Anne-Brit and Wong, Amy C. Lee and Keim, Paul S and Jackson, Paul J. (2004) Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates. Applied and Environmental Microbiology, 70 (2). pp. 1068-1080. ISSN 1098-5336

Huarong, Zhang and DeWald, Laura E. and Kolb, Thomas E. and Koepke, Dan F. (2011) Genetic variation in ecophysiological and survival responses to drought in two native grasses: Koeleria Macrantha and Elymus Elymoides. Western North American Naturalist, 71 (1). pp. 25-32. ISSN 1944-8341

J

Jackson, Paul J. and Walthers, Eliza A. and Kalif, Abdullahi S. and Richmond, Kara L. and Adair, Debra M. and Hill, Karen K. and Kuske, Cheryl R. and Andersen, Gary L. and Wilson, Kenneth H. and Hugh-Jones, Martin and Keim, Paul (1997) Characterization of the variable-number tandem repeats in vrrA from different Bacillus anthracis isolates. Applied and Environmental Microbiology, 63 (4). pp. 1400-1405. ISSN 1098-5336

Johansson, Anders and Farlow, Jason and Larsson, Pär and Dukerich, Meghan and Chambers, Elias and Byström, Mona and Fox, James and Chu, May and Forsman, Mats and Sjöstedt, Anders and Keim, Paul (2004) Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis. Journal of Bacteriology, 186 (17). pp. 5808-5818. ISSN 1098-5530

K

Kaestli, Mirjam and Richardson, Leisha J. and Colman, Rebecca E. and Tuanyok, Apichai and Price, Erin P. and Bowers, Jolene R. and Mayo, Mark and Kelley, Erin and Seymour, Meagan L. and Sarovich, Derek S. and Pearson, Talima and Engelthaler, David M. and Wagner, David M. and Keim, Paul S. and Schupp, James M. and Currie, Bart J. (2012) Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. Journal of Clinical Microbiology, 50 (6). pp. 2059-2062. ISSN 1098-660X

Keim, P. and Price, L. B. and Klevytska, A. M. and Smith, K. L. and Schupp, J. M. and Okinaka, R. and Jackson, P. J. and Hugh-Jones, M. E. (2000) Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. Journal of Bacteriology, 182 (10). pp. 2928-2936. ISSN 1098-5530

Keim, Paul and Kalif, Abdulahi and Schupp, James and Hill, Karen and Travis, Steven E. and Richmond, Kara and Adair, Debra M. and Hugh-Jones, Martin and Kuske, Cheryl R. and Jackson, Paul (1997) Molecular evolution and diversity in Bacillus anthracis as detected by amplified fragment length polymorphism markers. Journal of Bacteriology, 179 (3). pp. 818-824. ISSN 1098-5530

Keim, Paul and Smith, Kimothy L. and Keys, Christine and Takahashi, Hiroshi and Kurata, Takeshi and Kaufmann, Arnold (2001) Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan. Journal of Clinical Microbiology, 39 (12). pp. 4566-4567. ISSN 1098-660X

Klevytska, Alexandra M. and Price, Lance B. and Schupp, James M. and Worsham, Patricia L. and Wong, Jane and Keim, Paul (2001) Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. Journal of Clinical Microbiology, 39 (9). pp. 3179-3185. ISSN 1098-660X

L

Liguori, Andrew P. and Warrington, Stephanie D. and Ginther, Jennifer L. and Pearson, Talima and Bowers, Jolene and Glass, Mindy B. and Mayo, Mark and Wuthiekanun, Vanaporn and Engelthaler, David and Peacock, Sharon J. and Currie, Bart J. and Wagner, David M. and Keim, Paul S and Tuanyok, Apichai (2011) Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. PLoS ONE, 6 (12). e29323. ISSN 1932-6203

Litvintseva, Anastasia P. and Hurst, Steven and Gade, Lalitha and Frace, Michael A. and Hilsabeck, Remy and Schupp, James M. and Gillece, John D. and Roe, Chandler and Smith, David and Keim, Paul and Lockhart, Shawn R. and Changayil, Shankar and Weil, M. Ryan and MacCannell, Duncan R. and Brandt, Mary E. and Engelthaler, David M. (2014) Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. Journal of Clinical Microbiology, 52 (9). pp. 3216-3222. ISSN 1098-660X

Lowell, Jennifer L. and Wagner, David M. and Atshabar, Bakyt and Antolin, Michael F. and Vogler, Amy J. and Keim, Paul and Chu, May C. and Gage, Kenneth L. (2005) Identifying sources of human exposure to plague. Journal of Clinical Microbiology, 43 (2). pp. 650-656. ISSN 1098-660X

M

Maho, Angaya and Rossano, Alexandra and Haechler, Herbert and Holzer, Anita and Schelling, Esther and Zinsstag, Jakob and Hassane, Mahamat H and Toguebaye, Bhen S and Akakpo, Ayayi J and Van Ert, Matthew and Keim, Paul S and Kenefic, Leo and Frey, Joachim and Perreten, Vincent (2006) Antibiotic susceptibility and molecular diversity of Bacillus anthracis strains in Chad: Detection of a new phylogenetic subgroup. Journal of Clinical Microbiology, 44 (9). pp. 3422-3425. ISSN 1098-660X

Maroja, Luana S. and Wilder, Jason A. (2012) Where Do I Come From? Using Student’s Mitochondrial DNA to Teach About Phylogeny, Molecular Clocks, and Population Genetics. Evolution: Education and Outreach, 5 (3). pp. 501-507. ISSN 1936-6434

McRobb, Evan and Sarovich, Derek S. and Price, Erin P. and Kaestli, Mirjam and Mayo, Mark and Keim, Paul and Currie, Bart J. (2015) Tracing melioidosis back to the source: using whole-genome sequencing to investigate an outbreak originating from a contaminated domestic water supply. Journal of Clinical Microbiology, 53 (4). pp. 1144-1148. ISSN 1098-660X

Muller, Emilie E. L. and Pinel, Nicolás and Gillece, John D. and Schupp, James M. and Price, Lance B. and Engelthaler, David M. and Levantesi, Caterina and Tandoi, Valter and Luong, Khai and Baliga, Nitin S. and Korlach, Jonas and Keim, Paul S. and Wilmes, Paul (2012) Genome sequence of "Candidatus Microthrix parvicella" bio 17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant. Journal of Bacteriology, 194 (23). pp. 6670-6671. ISSN 1098-5530

O

Okinaka, R. T. and Cloud, K. and Hampton, O. and Hoffmaster, A.R. and Hill, K. K. and Keim, P. and Koehler, T. M. and Lamke, G. and Kumano, S. and Mahillon, J. and Manter, D. and Martinez, Y. and Ricke, D. and Svensson, R. and Jackson, P. J. (1999) Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes. Journal of Bacteriology, 181 (20). pp. 6509-6515. ISSN 1098-5530

Okinaka, Richard T and Price, Erin P. and Wolken, Spenser R. and Gruendike, Jeffrey M. and Chung, Wai K. and Pearson, Talima and Xie, Gary and Munk, Chris and Hill, Karen K. and Challacombe, Jean and Ivins, Bruce E. and Schupp, James M. and Beckstrom-Sternberg, Stephen M. and Friedlander, Arthur and Keim, Paul (2011) An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics. BMC Genomics, 12 (1). p. 477. ISSN 1471-2164

Okinaka, Richard T. and Challacombe, Jean and Drees, Kevin and Birdsell, Dawn N. and Janke, Nicolette and Naumann, Amber and Seymour, Meagan and Hornstra, Heidie and Schupp, James and Sahl, Jason and Foster, Jeffrey T. and Pearson, Talima and Turnbull, Peter and Keim, Paul (2014) Genome sequence of Bacillus anthracis STI, a sterne-like Georgian/Soviet vaccine strain. Genome Announcements, 2 (5). e00853-14. ISSN 2169-8287

P

Podin, Yuwana and Sarovich, Derek S. and Price, Erin P. and Kaestli, Mirjam and Mayo, Mark and Hii, KingChing and Ngian, HieUng and Wong, SeeChang and Wong, IngTien and Wong, JinShyan and Mohan, Anand and Ooi, MongHow and Fam, TemLom and Wong, Jack and Tuanyok, Apichai and Keim, Paul and Giffard, Philip M. and Currie, Bart J. (2014) Burkholderia pseudomallei isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides. Antimicrobial Agents and Chemotherapy, 58 (1). pp. 162-166. ISSN 1098-6596

Price, Erin P. and Sarovich, Derek S. and Viberg, Linda and Mayo, Mark and Kaestli, Mirjam and Tuanyok, Apichai and Foster, Jeffrey T. and Keim, Paul and Pearson, Talima and Currie, Bart J. (2015) Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. Journal of Clinical Microbiology, 53 (1). pp. 282-286. ISSN 1098-660X

Price, Erin P. and Sarovich, Derek S. and Webb, Jessica R. and Ginther, Jennifer L. and Mayo, Mark and Cook, James M. and Seymour, Meagan L. and Kaestli, Mirjam and Theobald, Vanessa and Hall, Carina M. and Busch, Joseph D. and Foster, Jeffrey T. and Keim, Paul and Wagner, David M. and Tuanyok, Apichai and Pearson, Talima R. and Currie, Bart J. (2013) Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. PLoS ONE, 8 (8). e71647. ISSN 1932-6203

Price, Lance B. and Hugh-Jones, Martin and Jackson, Paul J. and Keim, Paul (1999) Genetic diversity in the protective antigen gene of Bacillus anthracis. Journal of Bacteriology, 181 (8). pp. 2358-2362. ISSN 1098-5530

Price, Lance B. and Johnson, James R. and Aziz, Maliha and Clabots, Connie and Johnston, Brian and Tchesnokova, Veronika and Nordstrom, Lora and Billig, Maria and Chattopadhyay, Sujay and Stegger, Marc and Andersen, Paal S. and Pearson, Talima and Riddell, Kim and Rogers, Peggy and Scholes, Delia and Kahl, Barbara and Keim, Paul and Sokurenko, Evgeni V. (2013) The epidemic of extended-spectrum-beta-lactamase-producing Escherichia coli ST131 is driven by a single highly pathogenic subclone, H30-Rx. mBio, 4 (6). 00377-13. ISSN 2150-7511

Price, Lance B. and Stegger, Marc and Hasman, Henrik and Aziz, Maliha and Larsen, Jesper and Andersen, Paal Skytt and Pearson, Talima and Waters, Andrew E. and Foster, Jeffrey T. and Schupp, James and Gillece, John and Driebe, Elizabeth and Liu, Cindy M. and Springer, Burkhard and Zdovc, Irena and Battisti, Antonio and Franco, Alessia and Żmudzki, Jacek and Schwarz, Stefan and Butaye, Patrick and Jouy, Eric and Pomba, Constanca and Porrero, M. Concepción and Ruimy, Raymond and Smith, Tara C. and Robinson, D. Ashley and Weese, J. Scott and Arriola, Carmen Sofia and Yu, Fangyou and Laurent, Frederic and Keim, Paul and Skov, Robert and Aarestrup, Frank M. (2012) Staphylococcus aureus CC398: Host adaptation and emergence of methicillin resistance in livestock. mBio, 3 (1). e00305-11. ISSN 2150-7511

Price, Lance B. and Vogler, Amy and Pearson, Talima and Busch, Joseph D. and Schupp, James M. and Keim, Paul (2003) In vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to ciprofloxacin. Antimicrobial Agents and Chemotherapy, 47 (7). pp. 2362-2365. ISSN 1098-6596

R

Radnedge, Lyndsay and Agron, Peter G. and Hill, Karen K. and Jackson, Paul J. and Ticknor, Lawrence O. and Keim, Paul and Andersen, Gary L. (2003) Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Applied and Environmental Microbiology, 69 (5). pp. 2755-2764. ISSN 1098-5336

Ravel, Jacques and Jiang, Lingxia and Stanley, Scott T. and Wilson, Mark R. and Decker, R. Scott and Read, Timothy D. and Worsham, Patricia and Keim, Paul S. and Salzberg, Steven L. and Fraser-Liggett, Claire M. and Rasko, David A. (2009) The complete genome sequence of Bacillus anthracis Ames "Ancestor". Journal of Bacteriology, 191 (1). pp. 445-446. ISSN 1098-5530

Rawat, Arun and Engelthaler, David M. and Driebe, Elizabeth M. and Keim, Paul and Foster, Jeffrey T. (2014) MetaGeniE: Characterizing human clinical samples using deep metagenomic sequencing. PLoS ONE, 9 (11). e11091. ISSN 1932-6203

Rideout, Jai Ram and He, Yan and Navas-Molina, Jose A. and Walters, William A. and Ursell, Luke K. and Gibbons, Sean M. and Chase, John and McDonald, Daniel and Gonzalez, Antonio and Robbins-Pianka, Adam and Clemente, Jose C. and Gilbert, Jack A. and Huse, Susan M. and Zhou, Hong-Wei and Knight, Rob and Caporaso, J. Gregory (2014) Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ, 2 (e545). ISSN 2167-8359

Rivarola, Maximo and Foster, Jeffrey T. and Chan, Agnes P. and Williams, Amber L. and Rice, Danny W. and Liu, Xinyue and Melake-Berhan, Admasu and Huot Creasy, Heather and Puiu, Daniela and Rosovitz, M. J. and Khouri, Hoda M. and Beckstrom-Sternberg, Stephen M. and Allan, Gerard J. and Keim, Paul and Ravel, Jacques and Rabinowicz, Pablo D. (2011) Castor bean organelle genome sequencing and worldwide genetic diversity analysis. PLoS ONE, 6 (7). e21743. ISSN 1932-6203

Roy, A.-S. and Gibbons, S. M. and Schunck, H. and Owens, S. and Caporaso, J. G. and Sperling, M. and Nissimov, J. I. and Romac, S. and Bittner, L. and Riebesell, U. and LaRoche, J. and Gilbert, J. A. (2013) Ocean acidification shows negligible impacts on high-latitude bacterial community structure in coastal pelagic mesocosms. Biogeosciences, 10 (1). pp. 555-566. ISSN 1726-4189

S

Sahl, Jason W. and Caporaso, J. Gregory and Rasko, David A. and Keim, Paul (2014) The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PeerJ, 2 (e332). ISSN 2167-8359

Sahl, Jason W. and Morris, Carolyn R. and Emberger, Jennifer and Fraser, Claire M. and Ochieng, John Benjamin and Juma, Jane and Fields, Barry and Breiman, Robert F. and Gilmour, Matthew and Nataro, James P. and Rasko, David A. (2015) Defining the phylogenomics of Shigella species: A pathway to diagnostics. Journal of Clinical Microbiology, 53 (3). pp. 951-960. ISSN 1098-660X

Sahl, Jason W. and Stone, Joshua K. and Gelhaus, H. Carl and Warren, Richard L. and Cruttwell, Caroline J. and Funnell, Simon G. and Keim, Paul and Tuanyok, Apichai (2013) Genome sequence of Burkholderia pseudomallei NCTC 13392. Genome Announcements, 1 (3). e00183. ISSN 2169-8287

Service, Philip M (2013) Honesty, power and bootstrapping in composite interval quantitative trait locus mapping. Open Journal of Genetics, 3. pp. 127-140. ISSN 2162-4461

Shade, Ashley and Jones, Stuart E. and Caporaso, J. Gregory and Handelsman, Jo and Knight, Rob and Fierer, Noah and Gilbert, Jack A. (2014) Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. mBio, 5 (4). ISSN 2150-7511

Smith, K. L. and DeVos, V. and Bryden, H. and Price, L. B. and Hugh-Jones, M. E. and Keim, P. (2000) Bacillus anthracis diversity in Kruger National Park [South Africa]. Journal of Clinical Microbiology, 38 (10). pp. 3780-3784. ISSN 1098-660X

Stegger, Marc and Driebe, Elizabeth M. and Roe, Chandler and Lemmer, Darrin and Bowers, Jolene R. and Engelthaler, David M. and Keim, Paul and Andersen, Paal S. (2013) Genome sequence of Staphylococcus aureus strain CA-347, a USA600 methicillin-resistant isolate. Genome Announcements, 1 (4). e00517. ISSN 2169-8287

Stone, Joshua K. and Johnson, Shannon L. and Bruce, David C. and Detter, J. Chris and Mayo, Mark and Currie, Bart J. and Gelhaus, H. Carl and Keim, Paul and Tuanyok, Apichai (2013) Complete genome sequence of the encephalomyelitic Burkholderia pseudomallei strain MSHR305. Genome Announcements, 1 (4). e00656. ISSN 2169-8287

T

Ticknor, Lawrence O. and Kolstø, Anne-Brit and Hill, Karen K. and Keim, Paul and Laker, Miriam T. and Tonks, Melinda and Jackson, Paul J. (2001) Fluorescent amplified fragment length polymorphism analysis of Norwegian Bacillus cereus and Bacillus thuringiensis soil isolates. Applied and Environmental Microbiology, 67 (10). pp. 4863-4873. ISSN 1098-5336

Touchman, Jeffrey W. and Wagner, David M. and Hao, Jicheng and Mastrian, Stephen D. and Shah, Maulik K. and Vogler, Amy J. and Allender, Christopher J. and Clark, Erin A. and Benitez, Debbie S. and Youngkin, David J. and Girard, Jessica M. and Auerbach, Raymond K. and Beckstrom-Sternberg, Stephen M. and Keim, Paul (2007) A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. PLoS ONE, 2 (2). e220. ISSN 1932-6203

Trunck, Lily A. and Propst, Katie L. and Wuthiekanun, Vanaporn and Tuanyok, Apichai and Beckstrom-Sternberg, Stephen M and Beckstrom-Sternberg, James S. and Peacock, Sharon J. and Keim, Paul and Dow, Steven W. and Schweizer, Herbert P. (2009) Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomallei clinical isolates from Thailand. PLoS Neglected Tropical Diseases, 3 (9). e0000519. ISSN 1935-2727

Tuanyok, Apichai and Auerbach, Raymond K. and Brettin, Thomas S. and Bruce, David C. and Munk, A. Christine and Detter, J. Chris and Pearson, Talima and Hornstra, Heidie and Sermswan, Rasana W. and Wuthiekanun, Vanaporn and Peacock, Sharon J. and Currie, Bart J. and Keim, Paul and Wagner, David M. (2007) A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. Journal of Bacteriology, 189 (24). pp. 9044-9049. ISSN 1098-5530

Tuanyok, Apichai and Leadem, Benjamin R. and Auerbach, Raymond K. and Beckstrom-Sternberg, Stephen M and Beckstrom-Sternberg, James S. and Mayo, Mark and Wuthiekanun, Vanaporn and Brettin, Thomas S. and Nierman, William C. and Peacock, Sharon J. and Currie, Bart J. and Wagner, David M and Keim, Paul (2008) Genomic islands from five strains of Burkholderia pseudomallei. BMC Genomics, 9 (1). p. 566. ISSN 1471-2164

V

Van Ert, Matthew N. and Easterday, W. Ryan and Simonson, Tatum S. and U'Ren, Jana M. and Pearson, Talima and Kenefic, Leo J. and Busch, Joseph D. and Huynh, Lynn Y. and Dukerich, Megan and Trim, Carla B. and Beaudry, Jodi and Welty-Bernard, Amy and Read, Timothy and Fraser, Claire M. and Ravel, Jacques and Keim, Paul (2007) Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. Journal of Clinical Microbiology, 45 (1). pp. 47-53. ISSN 1098-660X

Van Zandt, Kristopher E. and Tuanyok, Apichai and Keim, Paul S. and Warren, Richard L. and Gelhaus, H. Carl (2012) An objective approach for Burkholderia pseudomallei strain selection as challenge material for medical countermeasures efficacy testing. Frontiers in Cellular and Infection Microbiology, 2. 9 pp.. ISSN 2235-2988

Vodkin, Lila O. and Khanna, Anupama and Shealy, Robin and Clough, Steven J. and Gonzalez, Delkin Orlando and Philip, Reena and Zabala, Gracia and Thibaud-Nissen, Françoise and Sidarous, Mark and Strömvik, Martina V. and Shoop, Elizabeth and Schmidt, Christina and Retzel, Ernest and Erpelding, John and Shoemaker, Randy C. and Rodriguez-Huete, Alicia M. and Polacco, Joseph C. and Coryell, Virginia and Keim, Paul S and Gong, George and Liu, Lei and Pardinas, Jose and Schweitzer, Peter (2004) Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. BMC genomics, 5. p. 73. ISSN 1471-2164

Vogler, Amy J. and Chan, Fabien and Nottingham, Roxanne and Andersen, Genevieve and Drees, Kevin and Beckstrom-Sternberg, Stephen M and Wagner, David M. and Chanteau, Suzanne and Keim, Paul (2013) A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague. mBio, 4 (1). e00623-12. ISSN 2150-7511

W

Wilder, Jason A and Cox, Murray P and Paquette, Andrew M. and Alford, Regan and Satyagraha, Ari W and Harahap, Alida and Sudoyo, Herawati (2011) Genetic continuity across a deeply divergent linguistic contact zone in North Maluku, Indonesia. BMC genetics, 12 (1). p. 100. ISSN 1471-2156

Y

Yin, Tongming and DiFazio, Stephen P. and Gunter, Lee E. and Zhang, Xinye and Sewell, Michell M. and Woolbright, Scott A. and Allan, Gery J. and Kelleher, Collin T. and Douglas, Carl J. and Wang, Mingxiu and Tuskan, Gerald A. (2008) Genome structure and emerging evidence of an incipient sex chromosome in Populus. Genome Research, 18 (3). pp. 422-430. ISSN 1549-5469

This list was generated on Mon Dec 11 19:11:25 2017 MST.