Items where Author is "Keim, Paul S"

Deng, Xiangyu and Shariat, Nikki and Driebe, Elizabeth M. and Roe, Chandler C. and Tolar, Beth and Trees, Eija and Keim, Paul and Zhang, Wei and Dudley, Edward G. and Fields, Patricia I. and Engelthaler, David M. (2015) Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis. Journal of Clinical Microbiology, 53 (1). pp. 212-218. ISSN 1098-660X

McRobb, Evan and Sarovich, Derek S. and Price, Erin P. and Kaestli, Mirjam and Mayo, Mark and Keim, Paul and Currie, Bart J. (2015) Tracing melioidosis back to the source: using whole-genome sequencing to investigate an outbreak originating from a contaminated domestic water supply. Journal of Clinical Microbiology, 53 (4). pp. 1144-1148. ISSN 1098-660X

Price, Erin P. and Sarovich, Derek S. and Viberg, Linda and Mayo, Mark and Kaestli, Mirjam and Tuanyok, Apichai and Foster, Jeffrey T. and Keim, Paul and Pearson, Talima and Currie, Bart J. (2015) Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. Journal of Clinical Microbiology, 53 (1). pp. 282-286. ISSN 1098-660X

Wahab, Tara and Birdsell, Dawn N. and Hjertqvist, Marika and Mitchell, Cedar L. and Wagner, David M. and Keim, Paul S. and Hedenström, Ingela and Löfdahl, Sven (2014) Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden. PLoS ONE, 9 (11). e112167. ISSN 1932-6203

Rawat, Arun and Engelthaler, David M. and Driebe, Elizabeth M. and Keim, Paul and Foster, Jeffrey T. (2014) MetaGeniE: Characterizing human clinical samples using deep metagenomic sequencing. PLoS ONE, 9 (11). e11091. ISSN 1932-6203

Khmaladze, Ekaterine and Birdsell, Dawn N. and Naumann, Amber A. and Hochhalter, Christian B. and Seymour, Meagan L. and Nottingham, Roxanne and Beckstrom-Sternberg, Stephen M. and Beckstrom-Sternberg, James and Nikolich, Mikeljon P. and Chanturia, Gvantsa and Zhgenti, Ekaterine and Zakalashvili, Mariam and Malania, Lile and Babuadze, Giorgi and Tsertsvadze, Nikoloz and Abazashvili, Natalia and Kekelidze, Merab and Tsanava, Shota and Imnadze, Paata and Ganz, Holly H. and Getz, Wayne M. and Pearson, Ofori and Gajer, Pawel and Eppinger, Mark and Ravel, Jacques and Wagner, David M. and Okinaka, Richard T. and Schupp, James M. and Keim, Paul and Pearson, Talima (2014) Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes. PLoS ONE, 9 (7). e102651. ISSN 1932-6203

Orata, Fabini D. and Keim, Paul S. and Boucher, Yan (2014) The 2010 cholera outbreak in Haiti: How science solved a controversy. PLoS Pathogens, 10 (4). e1003967. ISSN 1553-7366

Engelthaler, David M. and Hicks, Nathan D. and Gillece, John D. and Roe, Chandler C. and Schupp, James M. and Driebe, Elizabeth M. and Gilgado, Felix and Carriconde, Fabian and Trilles, Luciana and Firacative, Carolina and Ngamskulrungroj, Popchai and Castañeda, Elizabeth and Lazera, Marcia dos Santos and Melhem, Marcia S. C. and Pérez-Bercoff, Asa and Huttley, Gavin and Sorrell, Tania C. and Voelz, Kerstin and May, Robin C. and Fisher, Matthew C. and Thompson, George R. and Lockhart, Shawn R. and Keim, Paul and Meyer, Wieland (2014) Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal. mBio, 5 (4). pp. 1-18. ISSN 2150-7511

Okinaka, Richard T. and Challacombe, Jean and Drees, Kevin and Birdsell, Dawn N. and Janke, Nicolette and Naumann, Amber and Seymour, Meagan and Hornstra, Heidie and Schupp, James and Sahl, Jason and Foster, Jeffrey T. and Pearson, Talima and Turnbull, Peter and Keim, Paul (2014) Genome sequence of Bacillus anthracis STI, a sterne-like Georgian/Soviet vaccine strain. Genome Announcements, 2 (5). e00853-14. ISSN 2169-8287

Eppinger, Mark and Pearson, Talima and Koenig, Sara S K and Pearson, Ofori and Hicks, Nathan and Agrawal, Sonia and Sanjar, Fatemeh and Galens, Kevin and Daugherty, Sean and Crabtree, Jonathan and Hendriksen, Rene S and Price, Lance B and Upadhyay, Bishnu P and Shakya, Geeta and Fraser, Claire M and Ravel, Jacques and Keim, Paul S (2014) Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. mBio, 5 (6). e01721-14. ISSN 2150-7511

Scholz, Holger C. and Pearson, Talima and Hornstra, Heidie and Projahn, Michaela and Terzioglu, Rahime and Wernery, Renate and Georgi, Enrico and Riehm, Julia M. and Wagner, David M. and Keim, Paul S. and Joseph, Marina and Johnson, Bobby and Kinne, Joerg and Jose, Shanti and Hepp, Crystal M. and Witte, Angela and Wernery, Ulrich (2014) Genotyping of burkholderia mallei from an outbreak of glanders in bahrain suggests multiple introduction events. PLoS Neglected Tropical Diseases, 8 (9). e3195. ISSN 1935-2727

Shuey, Megan M. and Drees, Kevin P. and Lindner, Daniel L. and Keim, Paul S and Foster, Jeffrey T. (2014) Highly sensitive quantitative PCR for the detection and differentiation of Pseudogymnoascus destructans and other Pseudogymnoascus species. Applied & Environmental Microbiology, 80 (5). pp. 1726-1731. ISSN 1098-5336

Gyuranecz, M. and Sulyok, K. M. and Balla, E. and Mag, T. and Balazs, A. and Simor, Z. and Denes, B. and Hornok, S. and Bajnoczl, P. and Hornstra, H. M. and Pearson, T. and Keim, P. and Dan, A. (2014) Q fever epidemic in Hungary, April to July 2013. Eurosurveillance, 19 (30). 5 pp.. ISSN 1560-7917

Casadevall, Arturo and Enquist, Lynn and Imperiale, Michael J. and Keim, Paul and Osterholm, Michael T. and Relman, David A. (2014) Redaction of sensitive data in the publication of dual use research of concern. mBio, 5 (1). e00991. ISSN 2150-7511

Birdsell, Dawn N. and Vogler, Amy J. and Buchhagen, Jordan and Clare, Ashley and Kaufman, Emily and Naumann, Amber and Driebe, Elizabeth and Wagner, David M. and Keim, Paul S. (2014) TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations. PloS One, 9 (9). e10796. ISSN 1932-6203

Litvintseva, Anastasia P. and Hurst, Steven and Gade, Lalitha and Frace, Michael A. and Hilsabeck, Remy and Schupp, James M. and Gillece, John D. and Roe, Chandler and Smith, David and Keim, Paul and Lockhart, Shawn R. and Changayil, Shankar and Weil, M. Ryan and MacCannell, Duncan R. and Brandt, Mary E. and Engelthaler, David M. (2014) Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. Journal of Clinical Microbiology, 52 (9). pp. 3216-3222. ISSN 1098-660X

Sahl, Jason W. and Caporaso, J. Gregory and Rasko, David A. and Keim, Paul (2014) The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PeerJ, 2 (e332). ISSN 2167-8359

Price, Erin P. and Sarovich, Derek S. and Webb, Jessica R. and Ginther, Jennifer L. and Mayo, Mark and Cook, James M. and Seymour, Meagan L. and Kaestli, Mirjam and Theobald, Vanessa and Hall, Carina M. and Busch, Joseph D. and Foster, Jeffrey T. and Keim, Paul and Wagner, David M. and Tuanyok, Apichai and Pearson, Talima R. and Currie, Bart J. (2013) Accurate and rapid identification of the Burkholderia pseudomallei near-neighbour, Burkholderia ubonensis, using real-time PCR. PLoS ONE, 8 (8). e71647. ISSN 1932-6203

Harbeck, Michaela and Seifert, Lisa and Hänsch, Stephanie and Wagner, David M. and Birdsell, Dawn and Parise, Katy L. and Wiechmann, Ingrid and Grupe, Gisela and Thomas, Astrid and Keim, Paul and Zöller, Lothar and Bramanti, Barbara and Riehm, Julia M. and Scholz, Holger C. (2013) Yersinia pestis DNA from skeletal remains from the 6th century AD reveals insights into Justinianic plague. PLoS Pathogens, 9 (5). e1003349. ISSN 1553-7366

Stone, Joshua K. and Johnson, Shannon L. and Bruce, David C. and Detter, J. Chris and Mayo, Mark and Currie, Bart J. and Gelhaus, H. Carl and Keim, Paul and Tuanyok, Apichai (2013) Complete genome sequence of the encephalomyelitic Burkholderia pseudomallei strain MSHR305. Genome Announcements, 1 (4). e00656. ISSN 2169-8287

Birdsell, Dawn N. and Antwerpen, Markus and Keim, Paul and Hanczaruk, Matthias and Foster, Jeffrey T. and Sahl, Jason W. and Wagner, David M. and Grass, Gregor (2013) Draft genome sequences of two Bulgarian Bacillus anthracis strains. Genome Announcements, 1 (2). e00152-13. ISSN 2169-8287

Sahl, Jason W. and Gillece, John D. and Schupp, James M. and Waddell, Victor G. and Driebe, Elizabeth M. and Engelthaler, David M. and Keim, Paul (2013) Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in acinetobacter. PLoS ONE, 8 (1). e54287. ISSN 1932-6203

Sahl, Jason W. and Stone, Joshua K. and Gelhaus, H. Carl and Warren, Richard L. and Cruttwell, Caroline J. and Funnell, Simon G. and Keim, Paul and Tuanyok, Apichai (2013) Genome sequence of Burkholderia pseudomallei NCTC 13392. Genome Announcements, 1 (3). e00183. ISSN 2169-8287

Stegger, Marc and Driebe, Elizabeth M. and Roe, Chandler and Lemmer, Darrin and Bowers, Jolene R. and Engelthaler, David M. and Keim, Paul and Andersen, Paal S. (2013) Genome sequence of Staphylococcus aureus strain CA-347, a USA600 methicillin-resistant isolate. Genome Announcements, 1 (4). e00517. ISSN 2169-8287

Liu, Cindy M. and Hungate, Bruce A and Tobian, Aaron A. R. and Serwadda, David and Ravel, Jacques and Lester, Richard and Kigozi, Godfrey and Aziz, Maliha and Galiwango, Ronald M. and Nalugoda, Fred and Contente-Cuomo, Tania L. and Wawer, Maria J. and Keim, Paul and Gray, Ronald H. and Price, Lance B. (2013) Male circumcision significantly reduces prevalence and load of genital anaerobic bacteria. mBio, 4 (2). e00076-13. ISSN 2150-7511

Engelthaler, David M. and Kelley, Erin and Driebe, Elizabeth M. and Bowers, Jolene and Eberhard, Carl F. and Trujillo, Jesse and Decruyenaere, Frederic and Schupp, James M. and Mossong, Joel and Keim, Paul and Even, Jos (2013) Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries. BMC Infectious Diseases, 13 (1). p. 339. ISSN 1471-2334

Vogler, Amy J. and Chan, Fabien and Nottingham, Roxanne and Andersen, Genevieve and Drees, Kevin and Beckstrom-Sternberg, Stephen M and Wagner, David M. and Chanteau, Suzanne and Keim, Paul (2013) A decade of plague in Mahajanga, Madagascar: insights into the global maritime spread of pandemic plague. mBio, 4 (1). e00623-12. ISSN 2150-7511

Price, Erin P. and Dale, Julia L. and Cook, James M. and Sarovich, Derek S. and Seymour, Meagan L. and Ginther, Jennifer L. and Kaufman, Emily L. and Beckstrom-Sternberg, Stephen M. and Mayo, Mark and Kaestli, Mirjam and Glass, Mindy B. and Gee, Jay E. and Wuthiekanun, Vanaporn and Warner, Jeffrey M. and Baker, Anthony and Foster, Jeffrey T. and Tan, Patrick and Tuanyok, Apichai and Limmathurotsakul, Direk and Peacock, Sharon J. and Currie, Bart J. and Wagner, David M. and Keim, Paul and Pearson, Talima (2012) Development and validation of Burkholderia pseudomallei-specific real-time PCR assays for clinical, environmental or forensic detection Applications. PLoS ONE, 7 (5). e37723. ISSN 1932-6203

Birdsell, Dawn N. and Pearson, Talima and Price, Erin P. and Hornstra, Heidie M. and Nera, Roxanne D. and Stone, Nathan and Gruendike, Jeffrey and Kaufman, Emily L. and Pettus, Amanda H. and Hurbon, Audriana N. and Buchhagen, Jordan L. and Harms, N. Jane and Chanturia, Gvantsa and Gyuranecz, Miklos and Wagner, David M. and Keim, Paul S (2012) Melt analysis of mismatch amplification mutation assays (melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. PLoS ONE, 7 (3). e32866. ISSN 1932-6203

Sarovich, Derek S. and Price, Erin P. and Schulze, Alex T. Von and Cook, James M. and Mayo, Mark and Watson, Lindsey M. and Richardson, Leisha and Seymour, Meagan L. and Tuanyok, Apichai and Engelthaler, David M. and Pearson, Talima and Peacock, Sharon J. and Currie, Bart J. and Keim, Paul and Wagner, David M. (2012) Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. PLoS ONE, 7 (2). e30789. ISSN 1932-6203

Kaestli, Mirjam and Richardson, Leisha J. and Colman, Rebecca E. and Tuanyok, Apichai and Price, Erin P. and Bowers, Jolene R. and Mayo, Mark and Kelley, Erin and Seymour, Meagan L. and Sarovich, Derek S. and Pearson, Talima and Engelthaler, David M. and Wagner, David M. and Keim, Paul S. and Schupp, James M. and Currie, Bart J. (2012) Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. Journal of Clinical Microbiology, 50 (6). pp. 2059-2062. ISSN 1098-660X

Sarovich, Derek S and Price, Erin P and Limmathurotsakul, Direk and Cook, James M and Von Schulze, Alex T and Wolken, Spenser R and Keim, Paul and Peacock, Sharon J and Pearson, Talima (2012) Development of ceftazidime resistance in an acute Burkholderia pseudomallei infection. Infection and drug resistance, 5. pp. 129-132. ISSN 1178-6973

Yang, Ruifu and Keim, Paul (2012) Microbial forensics: A powerful tool for pursuing bioterrorism perpetrators and the need for an international database. Journal of Bioterrorism and Biodefense, 2 (S3). ISSN 2157-2526

Keim, Paul S. (2012) The NSABB recommendations: rationale, impact, and implications. mBio, 3 (1). e00021-12. ISSN 2150-7511

Price, Lance B. and Stegger, Marc and Hasman, Henrik and Aziz, Maliha and Larsen, Jesper and Andersen, Paal Skytt and Pearson, Talima and Waters, Andrew E. and Foster, Jeffrey T. and Schupp, James and Gillece, John and Driebe, Elizabeth and Liu, Cindy M. and Springer, Burkhard and Zdovc, Irena and Battisti, Antonio and Franco, Alessia and Żmudzki, Jacek and Schwarz, Stefan and Butaye, Patrick and Jouy, Eric and Pomba, Constanca and Porrero, M. Concepción and Ruimy, Raymond and Smith, Tara C. and Robinson, D. Ashley and Weese, J. Scott and Arriola, Carmen Sofia and Yu, Fangyou and Laurent, Frederic and Keim, Paul and Skov, Robert and Aarestrup, Frank M. (2012) Staphylococcus aureus CC398: Host adaptation and emergence of methicillin resistance in livestock. mBio, 3 (1). e00305-11. ISSN 2150-7511

Tuanyok, Apichai and Stone, Joshua K. and Mayo, Mark and Kaestli, Mirjam and Gruendike, Jeffrey and Georgia, Shalamar and Warrington, Stephanie and Mullins, Travis and Allender, Christopher J. and Wagner, David M. and Chantratita, Narisara and Peacock, Sharon J. and Currie, Bart J. and Keim, Paul (2012) The genetic and molecular basis of O-antigenic diversity in Burkholderia pseudomallei Lipopolysaccharide. PLoS Neglected Tropical Diseases, 6 (1). e1453. ISSN 1935-2727

Van Zandt, Kristopher E. and Tuanyok, Apichai and Keim, Paul S. and Warren, Richard L. and Gelhaus, H. Carl (2012) An objective approach for Burkholderia pseudomallei strain selection as challenge material for medical countermeasures efficacy testing. Frontiers in Cellular and Infection Microbiology, 2. 9 pp.. ISSN 2235-2988

Liguori, Andrew P. and Warrington, Stephanie D. and Ginther, Jennifer L. and Pearson, Talima and Bowers, Jolene and Glass, Mindy B. and Mayo, Mark and Wuthiekanun, Vanaporn and Engelthaler, David and Peacock, Sharon J. and Currie, Bart J. and Wagner, David M. and Keim, Paul S and Tuanyok, Apichai (2011) Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. PLoS ONE, 6 (12). e29323. ISSN 1932-6203

Marston, Chung K. and Allen, Christina A. and Beaudry, Jodi and Price, Erin P. and Wolken, Spenser R. and Pearson, Talima and Keim, Paul and Hoffmaster, Alex R. (2011) Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. PLoS ONE, 6 (12). e28274. ISSN 1932-6203

Hornstra, Heidie M. and Priestley, Rachael A. and Georgia, Shalamar M. and Kachur, Sergey and Birdsell, Dawn N. and Hilsabeck, Remy and Gates, Lauren T. and Samuel, James E. and Heinzen, Robert A. and Kersh, Gilbert J. and Keim, Paul and Massung, Robert F. and Pearson, Talima (2011) Rapid typing of Coxiella burnetii. PLoS ONE, 6 (11). e26201. ISSN 1932-6203

Engelthaler, David M. and Bowers, Jolene and Schupp, James A. and Pearson, Talima and Ginther, Jennifer and Hornstra, Heidie M. and Dale, Julia and Stewart, Tasha and Sunenshine, Rebecca and Waddell, Victor and Levy, Craig and Gillece, John and Price, Lance B. and Contente, Tania and Beckstrom-Sternberg, Stephen M. and Blaney, David D. and Wagner, David M. and Mayo, Mark and Currie, Bart J. and Keim, Paul and Tuanyok, Apichai (2011) Molecular investigations of a locally acquired case of melioidosis in southern AZ, USA. PLoS Neglected Tropical Diseases, 5 (10). e1347. ISSN 1935-2727

Vogler, Amy J. and Chan, Fabien and Wagner, David M. and Roumagnac, Philippe and Lee, Judy and Nera, Roxanne and Eppinger, Mark and Ravel, Jacques and Rahalison, Lila and Rasoamanana, Bruno W. and Beckstrom-Sternberg, Stephen M. and Achtman, Mark and Chanteau, Suzanne and Keim, Paul (2011) Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar. PLoS Neglected Tropical Diseases, 5 (9). e1319. ISSN 1935-2727

Rivarola, Maximo and Foster, Jeffrey T. and Chan, Agnes P. and Williams, Amber L. and Rice, Danny W. and Liu, Xinyue and Melake-Berhan, Admasu and Huot Creasy, Heather and Puiu, Daniela and Rosovitz, M. J. and Khouri, Hoda M. and Beckstrom-Sternberg, Stephen M. and Allan, Gerard J. and Keim, Paul and Ravel, Jacques and Rabinowicz, Pablo D. (2011) Castor bean organelle genome sequencing and worldwide genetic diversity analysis. PLoS ONE, 6 (7). e21743. ISSN 1932-6203

Baker, Anthony and Pearson, Talima and Price, Erin P. and Dale, Julia and Keim, Paul and Hornstra, Heidie and Greenhill, Andrew and Padilla, Gabriel and Warner, Jeffrey (2011) Molecular phylogeny of Burkholderia pseudomallei from a remote region of Papua New Guinea. PLoS ONE, 6 (3). e18343. ISSN 1932-6203

Dale, Julia and Price, Erin P. and Hornstra, Heidie and Busch, Joseph D. and Mayo, Mark and Godoy, Daniel and Wuthiekanun, Vanaporn and Baker, Anthony and Foster, Jeffrey T. and Wagner, David M. and Tuanyok, Apichai and Warner, Jeffrey and Spratt, Brian G. and Peacock, Sharon J. and Currie, Bart J. and Keim, Paul and Pearson, Talima (2011) Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei. PLoS Neglected Tropical Diseases, 5 (12). e1381. ISSN 1935-2727

Hendriksen, Rene S. and Price, Lance B. and Schupp, James M. and Gillece, John D. and Kaas, Rolf S. and Engelthaler, David M. and Bortolaia, Valeria and Pearson, Talima Ross and Waters, Andrew E. and Upadhyay, Bishnu Prasad and Shrestha, Sirjana Devi and Adhikari, Shailaja and Shakya, Geeta and Keim, Paul S. and Aarestrup, Frank M. (2011) Population genetics of Vibrio cholerae from Nepal in 2010: Evidence on the origin of the Haitian outbreak. mBio, 2 (4). e00157-11. ISSN 2150-7511

Hansen, Cristina M. and Vogler, Amy J. and Keim, Paul and Wagner, David M. and Hueffer, Karsten (2011) Tularemia in Alaska, 1938-2010. Acta Veterinaria Scandinavica, 53 (61). ISSN 1751-0147

Gillece, John D. and Schupp, James M. and Balajee, S. Arunmozhi and Harris, Julie and Pearson, Talima and Yan, Yongpan and Keim, Paul and DeBess, Emilio and Marsden-Haug, Nicola and Wohrle, Ron and Engelthaler, David M. and Lockhart, Shawn R. (2011) Whole genome sequence analysis of Cryptococcus gattii from the pacific northwest reveals unexpected diversity. Plos One, 6 (12). pp. 1-7. ISSN 1932-6203

Paxton, Eben H. and Unitt, Philip and Sogge, Mark K. and Whitfield, Mary and Keim, Paul (2011) Winter distribution of willow flycatcher subspecies. The Condor, 113 (3). pp. 608-618. ISSN 1938-5129

Bowers, Jolene R. and Engelthaler, David M. and Ginther, Jennifer L and Pearson, Talima and Peacock, Sharon J. and Tuanyok, Apichai and Wagner, David M. and Currie, Bart J. and Keim, Paul S. (2010) BurkDiff: A real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. PLoS ONE, 5 (11). e15413. ISSN 1932-6203

Chen, Peter E. and Willner, Kristin M. and Butani, Amy and Dorsey, Shakia and George, Matroner and Stewart, Andrew and Lentz, Shannon M. and Cook, Christopher E. and Akmal, Arya and Price, Lance B. and Keim, Paul S. and Mateczun, Alfred and Brahmbhatt, Trupti N. and Bishop-Lilly, Kimberly A. and Zwick, Michael E. and Read, Timothy D. and Sozhamannan, Shanmuga (2010) Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing. PLoS ONE, 5 (8). e12397. ISSN 1932-6203

Nandi, Tannistha and Ong, Catherine and Pratap Singh, Arvind and Boddey, Justin and Atkins, Timothy and Sarkar-Tyson, Mitali and Essex-Lopresti, Angela E. and Hui Hoon Chua, Angela E. and Pearson, Talima and Kreisberg, Jason F. and Nilsson, Christina and Ariyaratne, Pramila and Ronning, Catherine and Losada, Liliana and Yijun Ruan, Liliana and Wing-Kin Sung, Liliana and Woods, Donald and Titball, Richard W. and Beacham, Ifor and Peak, Ian and Keim, Paul and Nierman, William C. and Tan, Patrick (2010) A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. PLoS Pathogens, 6 (4). e1000845. ISSN 1553-7366

Price, Erin P. and Hornstra, Heidie M. and Limmathurotsakul, Direk and Max, Tamara L. and Sarovich, Derek S. and Vogler, Amy J. and Dale, Julia L. and Ginther, Jennifer L. and Leadem, Benjamin and Colman, Rebecca E. and Foster, Jeffrey T. and Tuanyok, Apichai and Wagner, David M. and Peacock, Sharon J. and Pearson, Talima and Keim, Paul (2010) Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathogens, 6 (1). e1000725. ISSN 1553-7366

Price, Lance B. and Liu, Cindy M. and Johnson, Kristine E. and Aziz, Maliha and Lau, Matthew K. and Bowers, Jolene and Ravel, Jacques and Keim, Paul S. and Serwadda, David and Wawer, Maria J. and Gray, Ronald H. (2010) The effects of circumcision on the penis microbiome. PLoS ONE, 5 (1). e8422. ISSN 1932-6203

Cummings, Craig A. and Chung, Christina A. Bormann and Fang, Rixun and Barker, Melissa and Brzoska, Pius and Williamson, Phillip C. and Beaudry, Jodi and Matthews, Molly and Schupp, James and Wagner, David M. and Birdsell, Dawn and Vogler, Amy J. and Furtado, Manohar R. and Keim, Paul and Budowle, Bruce (2010) Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investigative Genetics, 1 (1). 1/14/2015. ISSN 2041-2223

Losada, Liliana and Ronning, Catherine M. and DeShazer, David and Woods, Donald and Fedorova, Natalie and Kim, H. Stanley and Shabalina, Svetlana A. and Pearson, Talima R. and Brinkac, Lauren and Tan, Patrick and Nandi, Tannistha and Crabtree, Jonathan and Badger, Jonathan and Beckstrom-Sternberg, Stephen M. and Saqib, Muhammad and Schutzer, Steven E. and Keim, Paul and Nierman, William C. (2010) Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biology and Evolution, 2. pp. 102-116. ISSN 1759-6653

Greenberg, David L. and Busch, Joseph D. and Keim, Paul and Wagner, David M. (2010) Identifying experimental surrogates for Bacillus anthracis spores: a review. Investigative Genetics, 1 (1). p. 4. ISSN 2041-2223

Foster, Jeffrey T. and Allan, Gerard J. and Chan, Agnes P. and Rabinowicz, Pablo D. and Ravel, Jacques and Jackson, Paul J. and Keim, Paul (2010) Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis). BMC Plant Biology, 10 (13). ISSN 1471-2229

Trunck, Lily A. and Propst, Katie L. and Wuthiekanun, Vanaporn and Tuanyok, Apichai and Beckstrom-Sternberg, Stephen M and Beckstrom-Sternberg, James S. and Peacock, Sharon J. and Keim, Paul and Dow, Steven W. and Schweizer, Herbert P. (2009) Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomallei clinical isolates from Thailand. PLoS Neglected Tropical Diseases, 3 (9). e0000519. ISSN 1935-2727

Price, Lance B. and Liu, Cindy M and Melendez, Johan H. and Frankel, Yelena M. and Engelthaler, David and Aziz, Maliha and Bowers, Jolene and Rattray, Rogan and Ravel, Jacques and Kingsley, Chris and Keim, Paul S. and Lazarus, Gerald S. and Zenilman, Jonathan M. (2009) Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: Impact of diabetes and antibiotics on chronic wound microbiota. PLoS ONE, 4 (7). e6462. ISSN 1932-6203

Larsson, Pär and Elfsmark, Daniel and Svensson, Kerstin and Wikström, Per and Forsman, Mats and Brettin, Thomas and Keim, Paul and Johansson, Anders (2009) Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. PLoS Pathogens, 5 (6). e1000472. ISSN 1553-7366

Champion, Mia D. and Zeng, Qiandong and Nix, Eli B. and Nano, Francis E. and Keim, Paul S and Kodira, Chinnappa D. and Borowsky, Mark and Young, Sarah and Koehrsen, Michael and Engels, Reinhard and Pearson, Matthew and Howarth, Clint and Larson, Lisa and White, Jared and Alvarado, Lucia and Forsman, Mats and Bearden, Scott W. and Sjoestedt, Anders and Titball, Richard and Michell, Stephen L. and Birren, Bruce and Galagan, James (2009) Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. PLoS Pathogens, 5 (5). e1000459. ISSN 1553-7366

Kenefic, Leo J. and Pearson, Talima and Okinaka, Richard T. and Schupp, James M. and Wagner, David M. and Hoffmaster, Alex R. and Trim, Carla P. and Chung, Wai-Kwan and Beaudry, Jodi A. and Jiang, L. and Gajer, P. and Foster, Jeffrey T. and Mead, James I. and Ravel, Jacques and Keim, Paul (2009) Pre-columbian origins for North American anthrax. PLos One, 4 (March). e4813. ISSN 1932-6203

Tiller, Rebekah V. and De, Barun K. and Boshra, Marie and Huynh, Lynn Y. and Ert, Matthew N. Van and Wagner, David M. and Klena, John and Mohsen, T. S. and El-Shafie, S. S. and Keim, Paul and Hoffmaster, Alex R. and Wilkins, Patricia P. and Pimentel, Guillermo (2009) Comparison of two multiple-locus variable-number tandem-repeat analysis methods for molecular strain typing of human Brucella melitensis isolates from the Middle East. Journal of Clinical Microbiology, 47 (7). pp. 2226-2231. ISSN 1098-660X

Tuanyok, Apichai and Leadem, Benjamin R. and Auerbach, Raymond K. and Beckstrom-Sternberg, Stephen M and Beckstrom-Sternberg, James S. and Mayo, Mark and Wuthiekanun, Vanaporn and Brettin, Thomas S. and Nierman, William C. and Peacock, Sharon J. and Currie, Bart J. and Wagner, David M and Keim, Paul (2008) Genomic islands from five strains of Burkholderia pseudomallei. BMC Genomics, 9 (1). p. 566. ISSN 1471-2164

Sinclair, Ryan and Boone, Stephanie A. and Greenberg, David and Keim, Paul S and Gerba, Charles P. (2008) Persistence of category A select agents in the environment. Applied & Environmental Microbiology, 74 (3). pp. 555-563. ISSN 1098-5336

Foster, Jeffrey T. and Okinaka, Richard T. and Svensson, Rita and Shaw, Kathryn and De, Barun K. and Robison, Richard A. and Probert, William S. and Kenefic, Leo J. and Brown, William D. and Keim, Paul (2008) Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades. Journal of Clinical Microbiology, 46 (1). pp. 296-301. ISSN 1098-660X

Beckstrom-Sternberg, Stephen M. and Auerbach, Raymond K. and Godbole, Shubhada and Pearson, John V. and Beckstrom-Sternberg, James S. and Deng, Zuoming and Munk, Christine and Kubota, Kristy and Zhou, Yan and Bruce, David and Noronha, Jyothi and Scheuermann, Richard H. and Wang, Aihui and Wei, Xianying and Wang, Jianjun and Hao, Jicheng and Wagner, David M. and Brettin, Thomas S. and Brown, Nancy and Gilna, Paul and Keim, Paul S. (2007) Complete genomic characterization of a pathogenic A.II strain of francisella tularensis subspecies tularensis. PLoS ONE, 9. e947. ISSN 1932-6203

Touchman, Jeffrey W. and Wagner, David M. and Hao, Jicheng and Mastrian, Stephen D. and Shah, Maulik K. and Vogler, Amy J. and Allender, Christopher J. and Clark, Erin A. and Benitez, Debbie S. and Youngkin, David J. and Girard, Jessica M. and Auerbach, Raymond K. and Beckstrom-Sternberg, Stephen M. and Keim, Paul (2007) A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. PLoS ONE, 2 (2). e220. ISSN 1932-6203

U'ren, Jana M. and Hornstra, Heidie and Pearson, Talima and Schupp, James M. and Leadem, Benjamin and Georgia, Shalamar and Sermswan, Rasana W. and Keim, Paul (2007) Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand. Applied & Environmental Microbiology, 73 (20). pp. 6678-6681. ISSN 1098-5336

Ert, Matthew N. Van and Easterday, W. Ryan and Huynh, Lynn Y. and Okinaka, Richard T. and Hugh-Jones, Martin E. and Ravel, Jacques and Zanecki, Shaylan R. and Pearson, Talima and Simonson, Tatum S. and U'Ren, Jana M. and Kachur, Sergey M. and Leadem-Dougherty, Rebecca R. and Rhoton, Shane D. and Zinser, Guenevier and Farlow, Jason and Coker, Pamala R. and Smith, Kimothy L. and Wang, BingXiang and Kenefic, Leo J. and Fraser-Liggett, Claire M. and Wagner, David M. and Keim, Paul (2007) Global genetic population structure of Bacillus anthracis. PLos One, 2 (4). e461. ISSN 1932-6203

Van Ert, Matthew N. and Easterday, W. Ryan and Simonson, Tatum S. and U'Ren, Jana M. and Pearson, Talima and Kenefic, Leo J. and Busch, Joseph D. and Huynh, Lynn Y. and Dukerich, Megan and Trim, Carla B. and Beaudry, Jodi and Welty-Bernard, Amy and Read, Timothy and Fraser, Claire M. and Ravel, Jacques and Keim, Paul (2007) Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. Journal of Clinical Microbiology, 45 (1). pp. 47-53. ISSN 1098-660X

Auerbach, Raymond K. and Tuanyok, Apichai and Probert, William S. and Kenefic, Leo and Vogler, Amy J. and Bruce, David C. and Munk, Christine and Brettin, Thomas S. and Eppinger, Mark and Ravel, Jacques and Wagner, David M. and Keim, Paul (2007) Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. PLoS One, 8. e770. ISSN 1932-6203

Okinaka, Richard and Pearson, Talima and Keim, Paul (2006) Anthrax, but not Bacillus anthracis? PLoS Pathogens, 2 (11). e122. ISSN 1553-7366

Maho, Angaya and Rossano, Alexandra and Haechler, Herbert and Holzer, Anita and Schelling, Esther and Zinsstag, Jakob and Hassane, Mahamat H and Toguebaye, Bhen S and Akakpo, Ayayi J and Van Ert, Matthew and Keim, Paul S and Kenefic, Leo and Frey, Joachim and Perreten, Vincent (2006) Antibiotic susceptibility and molecular diversity of Bacillus anthracis strains in Chad: Detection of a new phylogenetic subgroup. Journal of Clinical Microbiology, 44 (9). pp. 3422-3425. ISSN 1098-660X

Pearson, Talima and Whitfield, Mary J. and Theimer, Tad C. and Keim, Paul (2006) Polygyny and extra-pair paternity in a population of Southwestern Willow Flycatchers. The Condor, 108 (3). pp. 571-578. ISSN 0010-5422

Easterday, W. Ryan and Van Ert, Matthew N. and Simonson, Tatum S. and Wagner, David M. and Kenefic, Leo J. and Allender, Christopher J. and Keim, Paul (2005) Use of single nucleotide polymorphisms in the plcR gene for specific identification of Bacillus anthracis. Journal of Clinical Microbiology, 43 (4). pp. 1995-1997. ISSN 1098-660X

Lowell, Jennifer L. and Wagner, David M. and Atshabar, Bakyt and Antolin, Michael F. and Vogler, Amy J. and Keim, Paul and Chu, May C. and Gage, Kenneth L. (2005) Identifying sources of human exposure to plague. Journal of Clinical Microbiology, 43 (2). pp. 650-656. ISSN 1098-660X

Cheung, Danny T.L. and Kam, Kai Man and Hau, Kong Lung and Au, Tak Kong and Marston, Chung K and Gee, Jay E and Popovic, Tanja and Van Ert, Matthew N and Kenefic, Leo and Keim, Paul and Hoffmaster, Alex R (2005) Characterization of a Bacillus anthracis isolate causing a rare case of fatal anthrax in a 2-Year-Old boy from Hong Kong. Journal of Clinical Microbiology, 43 (4). pp. 1992-1994. ISSN 1098-660X

Barns, Susan M. and Grow, Christy C. and Okinaka, Richard T. and Keim, Paul and Kuske, Cheryl R. (2005) Detection of diverse new francisella-like bacteria in environmental samples. Applied and Environmental Microbiology, 71 (9). pp. 5494-5500. ISSN 1098-5336

Fasanella, Antonio and Van Ert, Matthew and Altamura, Settimia A and Garofolo, Giuliano and Buonavoglia, Canio and Leori, Guido and Huynh, Lynn and Zanecki, Shaylan and Keim, Paul (2005) Molecular diversity of Bacillus anthracis in Italy. Journal of Clinical Microbiology, 43 (7). pp. 3398-3401. ISSN 1098-660X

Hill, Karen K. and Ticknor, Lawrence O. and Okinaka, Richard T. and Asay, Michelle and Blair, Heather and Bliss, Katherine A. and Laker, Mariam and Pardington, Paige E. and Richardson, Amber P. and Tonks, Melinda and Beecher, Douglas J. and Kemp, John D. and Kolstø, Anne-Brit and Wong, Amy C. Lee and Keim, Paul S and Jackson, Paul J. (2004) Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates. Applied and Environmental Microbiology, 70 (2). pp. 1068-1080. ISSN 1098-5336

Vodkin, Lila O. and Khanna, Anupama and Shealy, Robin and Clough, Steven J. and Gonzalez, Delkin Orlando and Philip, Reena and Zabala, Gracia and Thibaud-Nissen, Françoise and Sidarous, Mark and Strömvik, Martina V. and Shoop, Elizabeth and Schmidt, Christina and Retzel, Ernest and Erpelding, John and Shoemaker, Randy C. and Rodriguez-Huete, Alicia M. and Polacco, Joseph C. and Coryell, Virginia and Keim, Paul S and Gong, George and Liu, Lei and Pardinas, Jose and Schweitzer, Peter (2004) Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. BMC genomics, 5. p. 73. ISSN 1471-2164

Radnedge, Lyndsay and Agron, Peter G. and Hill, Karen K. and Jackson, Paul J. and Ticknor, Lawrence O. and Keim, Paul and Andersen, Gary L. (2003) Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Applied and Environmental Microbiology, 69 (5). pp. 2755-2764. ISSN 1098-5336

Spurgiesz, R. Scott and Quitugua, Teresa N. and Smith, Kimothy L. and Schupp, James and Palmer, Eldon G. and Cox, Rebecca A. and Keim, Paul (2003) Molecular typing of mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates. Journal of Clinical Microbiology, 41 (9). pp. 4224-4230. ISSN 1098-660X

Fouet, Agnès and Smith, Kimothy L. and Keys, Chris and Vaissaire, Josée and Le Doujet, Claudine and Levy, Martine and Mock, Michèle and Keim, Paul (2002) Diversity among French Bacillus anthracis isolates. Journal of Clinical Microbiology, 40 (12). pp. 4732-4734. ISSN 1098-660X

Farlow, Jason and Postic, Danielle and Smith, Kimothy L. and Jay, Zack and Baranton, Guy and Keim, Paul (2002) Strain typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis. Journal of Clinical Microbiology, 40 (12). pp. 4612-4618. ISSN 1098-660X

Paxton, Eben H. and Sogge, Mark K. and McCarthey, Tracy D. and Keim, Paul (2002) Nestling sex ratio in the southwestern willow flycatcher. Condor, 104 (4). pp. 877-881. ISSN 1938-5129

Keim, Paul and Smith, Kimothy L. and Keys, Christine and Takahashi, Hiroshi and Kurata, Takeshi and Kaufmann, Arnold (2001) Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan. Journal of Clinical Microbiology, 39 (12). pp. 4566-4567. ISSN 1098-660X

Farlow, Jason and Smith, Kimothy L. and Wong, Jane and Abrams, Michelle and Lytle, Michael and Keim, Paul (2001) Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis. Journal of Clinical Microbiology, 39 (9). pp. 3186-3192. ISSN 1098-660X

Ticknor, Lawrence O. and Kolstø, Anne-Brit and Hill, Karen K. and Keim, Paul and Laker, Miriam T. and Tonks, Melinda and Jackson, Paul J. (2001) Fluorescent amplified fragment length polymorphism analysis of Norwegian Bacillus cereus and Bacillus thuringiensis soil isolates. Applied and Environmental Microbiology, 67 (10). pp. 4863-4873. ISSN 1098-5336

Klevytska, Alexandra M. and Price, Lance B. and Schupp, James M. and Worsham, Patricia L. and Wong, Jane and Keim, Paul (2001) Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. Journal of Clinical Microbiology, 39 (9). pp. 3179-3185. ISSN 1098-660X

Smith, K. L. and DeVos, V. and Bryden, H. and Price, L. B. and Hugh-Jones, M. E. and Keim, P. (2000) Bacillus anthracis diversity in Kruger National Park [South Africa]. Journal of Clinical Microbiology, 38 (10). pp. 3780-3784. ISSN 1098-660X

Adair, D. M. and Worsham, P. L. and Hill, K. K. and Klevytska, A. M. and Jackson, P. J. and Friedlander, A. M. and Keim, P. (2000) Diversity in a variable-number tandem repeat from Yersinia pestis. Journal of Clinical Microbiology, 38 (4). pp. 1516-1519. ISSN 1098-660X

Busch, Joseph D. and Miller, Mark P. and Paxton, Eben H. and Sogge, Mark K. and Keim, Paul (2000) Genetic variation in the endangered Southwestern Willow Flycatcher. Auk, 117 (3). pp. 586-595. ISSN 1938-4254

Willardson, Barry M. and Wilkins, Jon F. and Rand, Timothy A. and Schupp, James M. and Hill, Karen K. and Keim, Paul and Jackson, Paul J. (1998) Development and testing of a bacterial biosensor for toluene-based environmental contaminants. Applied and Environmental Microbiology, 64 (3). pp. 1006-1012. ISSN 1098-5336

Jackson, Paul J. and Walthers, Eliza A. and Kalif, Abdullahi S. and Richmond, Kara L. and Adair, Debra M. and Hill, Karen K. and Kuske, Cheryl R. and Andersen, Gary L. and Wilson, Kenneth H. and Hugh-Jones, Martin and Keim, Paul (1997) Characterization of the variable-number tandem repeats in vrrA from different Bacillus anthracis isolates. Applied and Environmental Microbiology, 63 (4). pp. 1400-1405. ISSN 1098-5336